标题: 磷脂膜构建程序genmem，genmixmem的linux二进制版本 [打印本页] 作者Author: ene 时间: 2019-6-9 16:15 标题: 磷脂膜构建程序genmem，genmixmem的linux二进制版本 本帖最后由 ene 于 2019-6-9 16:21 编辑
genmem，genmixmem是sob老师开发的用于产生磷脂双分子层的程序。
原网址在这里：
genmem：http://sobereva.com/222；genmixmem：http://sobereva.com/245
这里上传了静态编译的genmem，genmixmem的64位linux版本，可直接运行。 (, 下载次数 Times of downloads: 30)
64 ;The number of lipids in each layer, should be square of an integer
64 ;Box length (Angstrom)
0 ;0=Don't randomly rotate molecule, 1=randomly rotate molecule, -1/-2/-3=rotate 45/90/180 degree in the second layer
80.5,39.5 ;The Z position of the reference atom in layer 1 and layer 2
#
# Below is pdb file of each lipid type, its number in each layer and the index of reference atom
#
"pdbinput/DGDG343z.pdb",20,27
"pdbinput/LysoPGz.pdb",10,5
"pdbinput/MGDG366z.pdb",14,26
"pdbinput/PA342z.pdb",15,21
"pdbinput/PC364z.pdb",5,24
NOTE: The geometry of the lipid provided in your pdb file should be aligned to Z axis, and the head group should be toward to the positive direction of Z axis. The lipid will be evenly placed in the box.
Hint: Commonly a lipid occupies 65 Angstrom^2, you can correspondingly estimate box length.