泛函/基组:B3LYP/cc-pvdz
溶剂模型:显式溶剂模型(氨基酸周围是7A厚的水分子层),未考虑任何隐式溶剂模型。
使用ONIOM方法和电子内嵌,氨基酸分子组成high level,水分子组成low level,oniom(b3lyp/cc-pvdz:amber)=embed
质子化态:中性分子,不电离,R-COOH不是R-COO(-)
当校正因子为0.99时其他峰与实验重合得很好,但是这个峰差得偏大。
另外,这个峰旁边还有一个峰是酰胺I带(amide I)的峰,这个峰也被高估了100多波数。但是许多文献中都指出这是普遍现象,例如:
“since this amide I region is known to be even more overestimated compared to the rest of the spectrum”
“The amide I (mainly C=O stretch) frequencies are systematically predicted to be too high (by at least 100cm-1), which often correlates with the C=O bond length being too short.”
我想知道,是不是羧基中的C=O振动也跟amide I一样,由于C=O键太短导致上述现象。