计算化学公社

标题: 求助:在运行npt.tpr时出现的问题 [打印本页]

作者
Author:
TOPGAO    时间: 2021-3-9 21:10
标题: 求助:在运行npt.tpr时出现的问题
在运行npt.tpr出现以下报错:Step 2810, time 5.62 (ps)  LINCS WARNING
relative constraint deviation after LINCS:
rms 0.000003, max 0.000045 (between atoms 1401 and 1403)
bonds that rotated more than 30 degrees:
atom 1 atom 2  angle  previous, current, constraint length
   1392   1393   31.5    0.1080   0.1080      0.1080

step 2815: One or more water molecules can not be settled.
Check for bad contacts and/or reduce the timestep if appropriate.
Wrote pdb files with previous and current coordinates

这样的问题该如何解决,感谢!
附上我的npt.mdp

作者
Author:
sobereva    时间: 2021-3-10 04:56
(, 下载次数 Times of downloads: 19)
(, 下载次数 Times of downloads: 29)


根据原理便知,光给个mdp根本没用





欢迎光临 计算化学公社 (http://bbs.keinsci.com/) Powered by Discuz! X3.3