标题: VMD加载完蛋白质结构，在生成二级结构的时候，出现报错 [打印本页] 作者Author: ddddnight 时间: 2023-9-11 20:10 标题: VMD加载完蛋白质结构，在生成二级结构的时候，出现报错 在学习sob老师gromacs课程的时候，用1.93 Windows32位版本的VMD加载蛋白质之后，生成二级结构的时候，出现如下错误。想安装软件包里的64位版本的时候，双击安装包之后，鼠标旁边出现旋转加载的圆圈之后，没有任何反应，在另外一台电脑上就可以，不知道是不是系统的原因。
Info) F:/VMD/plugins/WIN32/molfile
vmd > Info) Using plugin pdb for structure file G:/cp2k/gromacs/file/file/VMD/2WFU.pdb
Info) Using plugin pdb for coordinates from file G:/cp2k/gromacs/file/file/VMD/2WFU.pdb
Info) Determining bond structure from distance search ...
Info) Eliminating bonds duplicated from existing structure...
Info) Analyzing structure ...
Info) Atoms: 371
Info) Bonds: 340
Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0
Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0
Info) Residues: 83
Info) Waters: 37
Info) Segments: 1
Info) Fragments: 39 Protein: 2 Nucleic: 0
Info) Finished with coordinate file G:/cp2k/gromacs/file/file/VMD/2WFU.pdb.
Info) In any publication of scientific results based in part or
Info) completely on the use of the program STRIDE, please reference:
Info) Frishman,D & Argos,P. (1995) Knowledge-based secondary structure
Info) assignment. Proteins: structure, function and genetics, 23, 566-579.
Only one input file is allowed
Action: secondary structure assignment
Usage: stride [Options] InputFile [ > file ]
Options:
-fFile Output file
-mFile MolScript file
-o Report secondary structure summary Only
-h Report Hydrogen bonds
-rId1Id2.. Read only chains Id1, Id2 ...
-cId1Id2.. Process only Chains Id1, Id2 ...
-q[File] Generate SeQuence file in FASTA format and die
Options are position and case insensitive
ERROR) Unable to find Stride output file: C:\Users\Zhongxun Tian\AppData\Local\Temp\3
ERROR) Stride::read_stride_record: unable to read output file from Stride
ERROR) Call to Stride program failed.