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标题: 求助 用GROMACS进行能量最小化后,进行平衡相模拟出错 [打印本页]

作者
Author:
爱迪生    时间: 2024-2-21 02:17
标题: 求助 用GROMACS进行能量最小化后,进行平衡相模拟出错
Fatal error:
Step 100: The total potential energy is nan, which is not finite. The LJ and
electrostatic contributions to the energy are 296885 and -1.4131e+06,
respectively. A non-finite potential energy can be caused by overlapping
interactions in bonded interactions or very large or Nan coordinate values.
Usually this is caused by a badly- or non-equilibrated initial configuration,
incorrect interactions or parameters in the topology.


itp是在ATB上下载的。说可能是TOP文件出错了莫


作者
Author:
sobereva    时间: 2024-2-21 03:00
诸如此类问题,按http://sobereva.com/soft/Sobtop#FAQ8说的解决思想,把体系简化反复测试,每种分子分别跑通了再说跑混合物的




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