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标题: 分析蛋白质受力时,因势能过高导致的报错 [打印本页]

作者
Author:
1154975925    时间: 2024-8-30 15:14
标题: 分析蛋白质受力时,因势能过高导致的报错
我想通过该指令gmx mdrun -s topol.tpr -o traj.trr -x traj.xtc -e ener.edr -g md.log来分析蛋白质在电场中的受力问题,但是出现了报错
Program:     gmx mdrun, version 2020.6-MODIFIED
Source file: src\gromacs\mdlib\sim_util.cpp (line 465)

Fatal error:
Step 0: The total potential energy is 1.48763e+15, which is extremely high.
The LJ and electrostatic contributions to the energy are 1.48763e+15 and
-1.34765e+06, respectively. A very high potential energy can be caused by
overlapping interactions in bonded interactions or very large coordinate
values. Usually this is caused by a badly- or non-equilibrated initial
configuration, incorrect interactions or parameters in the topology.

但直接使用gmx mdrun -deffnm md_0_1则不会。


作者
Author:
sobereva    时间: 2024-8-31 05:42
两条命令根本没有可比性。谁都不知道md_0_1是什么。倘若tpr文件叫md_0_1.tpr,你本来也不可能用第一条命令运行




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