这个二聚体我优化过T1态用UDFT 出来了,S1态的总也优化不出来 卡了半个月了 |
老师这个是输出文件,我看了下好像是我计算时间超出要求的时间了,您能帮我看一下具体是什么原因吗?![]() 谢谢老师了Sender: LSF System <lsfadmin@node31> Subject: Job 51442: <OPT> in cluster <njtech2> Exited Job <OPT> was submitted from host <login01> by user <hlma> in cluster <njtech2>. Job was executed on host(s) <14*node31>, in queue <high>, as user <hlma> in cluster <njtech2>. </gpfs/users_home/hlma> was used as the home directory. </gpfs/users_home/hlma/xueyan/saomiao/s1/.> was used as the working directory. Started at Results reported on Your job looked like: ------------------------------------------------------------ # LSBATCH: User input #!/bin/sh #BSUB -q high #BSUB -n 14 #BSUB -R "span[hosts=1]" #BSUB -cwd . #BSUB -e %J.err #BSUB -o %J.out #BSUB -J OPT jobname=78s username=`whoami` Current_WORKDIR=`pwd` Inputfile=${jobname}.com export g09root=/gpfs/soft/g16 #source $g09root/bsd/g09.profile export GAUSS_EXEDIR=/gpfs/soft/g16 export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/gpfs/soft/g16 GAUSS_RUNDIR=/tmp/$username/$LSB_JOBID if [ ! -a $GAUSS_RUNDIR ]; then echo "Scratch directory $GAUSS_RUNDIR created." mkdir -p $GAUSS_RUNDIR fi cp $Current_WORKDIR/$Inputfile $GAUSS_RUNDIR cd $GAUSS_RUNDIR GAUSS_SCRDIR=$GAUSS_RUNDIR/${jobname} if [ ! -a $GAUSS_SCRDIR ]; then echo "Scratch directory $GAUSS_SCRDIR created." mkdir -p $GAUSS_SCRDIR fi export GAUSS_SCRDIR echo "Using $GAUSS_SCRDIR for temporary Gaussian 09 files." echo "Starting Gaussian run at" `date` time /gpfs/soft/g16/g16 < $GAUSS_RUNDIR/${jobname}.com >$GAUSS_RUNDIR/${jobname}.log echo "Finished Gaussian run at" `date` echo $Current_WORKDIR mv $GAUSS_RUNDIR/*.chk $Current_WORKDIR (... more ...) ------------------------------------------------------------ TERM_RUNLIMIT: job killed after reaching LSF run time limit. Exited with exit code 140. Resource usage summary: CPU time : 8428928.00 sec. Max Memory : 30546 MB Average Memory : 13074.28 MB Total Requested Memory : - Delta Memory : - Max Swap : 128 MB Max Processes : 5 Max Threads : 19 Run time : 604808 sec. Turnaround time : 638611 sec. The output (if any) follows: Scratch directory /tmp/hlma/51442 created. Scratch directory /tmp/hlma/51442/78s created. Using /tmp/hlma/51442/78s for temporary Gaussian 09 files. Starting Gaussian run at Wed May 1 04:42:35 CST 2019 PS: Read file <51442.err> for stderr output of this job. |
|
“都没有得到结果”、“任务7天后停掉了”这种描述没法给回答者提供任何有效信息。自行看输出文件,把对于解决问题可能有效的信息呈献给回答者 这和加不加D3校正没有直接关系 优化用def-tzvp或6-311G**就足够了,def2-TZVP是给算能量用的 加不加D3仔细看此文 谈谈“计算时是否需要加DFT-D3色散校正?” http://sobereva.com/413(http://bbs.keinsci.com/thread-9772-1-1.html) |
手机版 Mobile version|北京科音自然科学研究中心 Beijing Kein Research Center for Natural Sciences|京公网安备 11010502035419号|计算化学公社 — 北京科音旗下高水平计算化学交流论坛 ( 京ICP备14038949号-1 )|网站地图
GMT+8, 2026-2-23 18:31 , Processed in 0.166207 second(s), 25 queries , Gzip On.