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发布时间: 2019-5-9 12:54

正文摘要:

一. 请问各位老师,我最近在对一个二聚体中间的两个具有面面堆积的分子进行势能面扫描,在两个中间具有面面堆积的环上引入虚原子,借助dimerscan 和 XYZ2QC生成高斯输入文件,做单点计算绘制势能面扫描曲线。我 ...

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jiang012582 发表于 Post on 2019-5-9 15:41:59
这个二聚体我优化过T1态用UDFT 出来了,S1态的总也优化不出来卡了半个月了
jiang012582 发表于 Post on 2019-5-9 15:38:36
老师这个是输出文件,我看了下好像是我计算时间超出要求的时间了,您能帮我看一下具体是什么原因吗?谢谢老师了
Sender: LSF System <lsfadmin@node31>
Subject: Job 51442: <OPT> in cluster <njtech2> Exited

Job <OPT> was submitted from host <login01> by user <hlma> in cluster <njtech2>.
Job was executed on host(s) <14*node31>, in queue <high>, as user <hlma> in cluster <njtech2>.
</gpfs/users_home/hlma> was used as the home directory.
</gpfs/users_home/hlma/xueyan/saomiao/s1/.> was used as the working directory.
Started at Results reported on
Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
#!/bin/sh

#BSUB -q high
#BSUB -n 14
#BSUB -R "span[hosts=1]"
#BSUB -cwd .
#BSUB -e %J.err
#BSUB -o %J.out
#BSUB -J OPT

jobname=78s

username=`whoami`
Current_WORKDIR=`pwd`

Inputfile=${jobname}.com

export g09root=/gpfs/soft/g16
#source $g09root/bsd/g09.profile

export GAUSS_EXEDIR=/gpfs/soft/g16
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/gpfs/soft/g16

GAUSS_RUNDIR=/tmp/$username/$LSB_JOBID
if [ ! -a $GAUSS_RUNDIR ]; then
   echo "Scratch directory $GAUSS_RUNDIR created."
   mkdir -p $GAUSS_RUNDIR
fi

cp $Current_WORKDIR/$Inputfile  $GAUSS_RUNDIR

cd $GAUSS_RUNDIR

GAUSS_SCRDIR=$GAUSS_RUNDIR/${jobname}
if [ ! -a $GAUSS_SCRDIR ]; then
   echo "Scratch directory $GAUSS_SCRDIR created."
   mkdir -p $GAUSS_SCRDIR
fi
export GAUSS_SCRDIR
echo "Using $GAUSS_SCRDIR for temporary Gaussian 09 files."

echo "Starting Gaussian run at" `date`

time /gpfs/soft/g16/g16 < $GAUSS_RUNDIR/${jobname}.com >$GAUSS_RUNDIR/${jobname}.log

echo "Finished Gaussian run at" `date`

echo $Current_WORKDIR

mv $GAUSS_RUNDIR/*.chk $Current_WORKDIR

(... more ...)
------------------------------------------------------------

TERM_RUNLIMIT: job killed after reaching LSF run time limit.
Exited with exit code 140.

Resource usage summary:

    CPU time :                                   8428928.00 sec.
    Max Memory :                                 30546 MB
    Average Memory :                             13074.28 MB
    Total Requested Memory :                     -
    Delta Memory :                               -
    Max Swap :                                   128 MB
    Max Processes :                              5
    Max Threads :                                19
    Run time :                                   604808 sec.
    Turnaround time :                            638611 sec.

The output (if any) follows:

Scratch directory /tmp/hlma/51442 created.
Scratch directory /tmp/hlma/51442/78s created.
Using /tmp/hlma/51442/78s for temporary Gaussian 09 files.
Starting Gaussian run at Wed May 1 04:42:35 CST 2019


PS:

Read file <51442.err> for stderr output of this job.

sobereva 发表于 Post on 2019-5-9 14:13:29
“都没有得到结果”、“任务7天后停掉了”这种描述没法给回答者提供任何有效信息。自行看输出文件,把对于解决问题可能有效的信息呈献给回答者

这和加不加D3校正没有直接关系

优化用def-tzvp或6-311G**就足够了,def2-TZVP是给算能量用的

加不加D3仔细看此文
谈谈“计算时是否需要加DFT-D3色散校正?”
http://sobereva.com/413http://bbs.keinsci.com/thread-9772-1-1.html

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