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openMolcas安装过程中报错

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发布时间: 2021-10-14 17:15

正文摘要:

按照这个博文《量子化学程序OpenMolcas的简易安装》安装openMolcas时提示报错请问是什么原因?(cmake是按照卢老师的文章:GROMACS的安装方法 安装的) [haorui@mafang build]$ CC=icc CXX=icpc FC=ifort cmake3 -DL ...

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zjxitcc 发表于 Post on 2021-10-17 11:44:24
本帖最后由 zjxitcc 于 2021-10-17 11:46 编辑
bluewhale 发表于 2021-10-17 11:35
用intel PS编译出来后的运行也有问题,考虑用openmpi + gcc编译.

我用intel parallel studio 2019, oneAPI等编译过,使用了很久,没有问题。gcc/gfortran编译出的会比icc/ifort慢(对于openmolcas而言)。如果你要编译MPI版本的话,假设openmolcas用icc/ifort,那么openmpi最好也用intel编译器编译。
bluewhale 发表于 Post on 2021-10-17 11:35:36
用intel PS编译出来后的运行也有问题,考虑用openmpi + gcc编译.
zjxitcc 发表于 Post on 2021-10-17 10:15:42
hmlyz 发表于 2021-10-16 14:58
感谢老师的解答 这个问题解决了 我再进行下一步make -j16时又报错了请问是什么原因?

先去掉-j16试试,你机子有16核么?没有的话不要-j16. 另外,机子有多少内存?别是1GB都不到
snljty 发表于 Post on 2021-10-16 16:13:17
hmlyz 发表于 2021-10-16 14:58
感谢老师的解答 这个问题解决了 我再进行下一步make -j16时又报错了请问是什么原因?

不好说,改成make -j 1继续编译试试
hmlyz 发表于 Post on 2021-10-16 14:58:42
snljty 发表于 2021-10-15 09:30
你要么没装anaconda3要么没启动anaconda3环境。再看一遍那篇推送,或者你自己pip补一个pyparsing包试试。

感谢老师的解答 这个问题解决了 我再进行下一步make -j16时又报错了请问是什么原因?
  1. Scanning dependencies of target espf.exe
  2. [ 96%] Linking Fortran executable ../../bin/rasscf.exe
  3. Scanning dependencies of target expbas.exe
  4. Scanning dependencies of target extf.exe
  5. Scanning dependencies of target false.exe
  6. [ 96%] Building Fortran object CMakeFiles/espf/CMakeFiles/espf.exe.dir/main.F90.o
  7. [ 96%] Building Fortran object CMakeFiles/dynamix/CMakeFiles/dynamix.exe.dir/main.F90.o
  8. [ 96%] Building Fortran object CMakeFiles/expbas/CMakeFiles/expbas.exe.dir/main.F90.o
  9. [ 96%] Building Fortran object CMakeFiles/extf/CMakeFiles/extf.exe.dir/main.F90.o
  10. /tmp/ifortb0YunI.i90: catastrophic error: **Internal compiler error: segmentation violation signal raised** Please report this error along with the circumstances in which it occurred in a Software Problem Report.  Note: File and line given may not be explicit cause of this error.
  11. [ 96%] Building Fortran object CMakeFiles/false/CMakeFiles/false.exe.dir/main.F90.o
  12. compilation aborted for /home/Fangma/LYZ/xiugai/OpenMolcas-v21.06/unit_tests/linalg_mod/test_linalg.F90 (code 1)
  13. make[2]: *** [unit_tests/linalg_mod/CMakeFiles/test_linalg.dir/test_linalg.F90.o] Error 1
  14. make[1]: *** [unit_tests/linalg_mod/CMakeFiles/test_linalg.dir/all] Error 2
  15. make[1]: *** Waiting for unfinished jobs....
  16. [ 96%] Linking Fortran executable ../../bin/casvb.exe
  17. [ 96%] Linking Fortran executable ../../bin/alaska.exe
  18. [ 96%] Linking Fortran executable ../../bin/averd.exe
  19. [ 96%] Linking Fortran executable ../../bin/cht3.exe
  20. [ 96%] Linking Fortran executable ../../bin/chcc.exe
  21. [ 96%] Linking Fortran executable ../../bin/caspt2.exe
  22. [ 96%] Linking Fortran executable ../../bin/cpf.exe
  23. [ 96%] Linking Fortran executable ../../bin/ccsdt.exe
  24. [ 96%] Linking Fortran executable ../../bin/espf.exe
  25. [ 96%] Linking Fortran executable ../../bin/dynamix.exe
  26. [ 96%] Linking Fortran executable ../../bin/extf.exe
  27. [ 96%] Linking Fortran executable ../../bin/expbas.exe
  28. [ 97%] Linking Fortran executable ../bin/test_sorting
  29. [ 97%] Linking Fortran executable ../../bin/false.exe
  30. [ 97%] Built target averd.exe
  31. [ 97%] Built target test_sorting
  32. [ 97%] Built target extf.exe
  33. [ 97%] Built target false.exe
  34. [ 97%] Built target ccsdt.exe
  35. [ 97%] Built target dynamix.exe
  36. [ 97%] Built target cht3.exe
  37. [ 97%] Built target expbas.exe
  38. [ 97%] Built target cpf.exe
  39. [ 97%] Built target chcc.exe
  40. [ 97%] Built target espf.exe
  41. [ 97%] Built target caspt2.exe
  42. [ 97%] Built target alaska.exe
  43. [ 97%] Built target casvb.exe
  44. [ 97%] Built target rasscf.exe
  45. make: *** [all] Error 2
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snljty 发表于 Post on 2021-10-15 09:30:35
你要么没装anaconda3要么没启动anaconda3环境。再看一遍那篇推送,或者你自己pip补一个pyparsing包试试。

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