注意现在安装包自带的spglib现在出现问题了,导致无法下载安装出错,需要按照下面的方式,把toolchain中对应的脚本修改一下,具体如下: https://github.com/cp2k/cp2k/pul ... 0560685ed42d54066aa |
参与人数Participants 1 | eV +3 | 收起 理由Reason |
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Acee | + 3 | 赞! |
本帖最后由 wanlichuan 于 2022-8-1 18:38 编辑 请教大佬,在Ubuntu20.04虚拟机上按照楼主的步骤安装,显示安装成功了: ------------------------------- Summary-------------------------------- Number of FAILED tests 0 Number of WRONG tests 0 Number of CORRECT tests 3806 Total number of tests 3806 Summary: correct: 3806 / 3806; 162min Status: OK …… …… Successfully built 1166e52fb4fa Successfully tagged cp2k_prod_psmp:latest 但是在运行任务时,出现了下面的错误: root@ubuntu:/home/cp2k10.0/benchmarks/QS_single_node#docker run --shm-size=1g -ti -v "$(pwd)":/mnt cp2k_prod_psmp mpiexec-genv OMP_NUM_THREADS=1 -np 2 cp2k dbcsr.inp ******** ****** ** PROGRAM STARTED AT 2022-07-29 01:42:00.884 ******* *** *** ** PROGRAM STARTED ON 38a900c1646c ** **** ****** PROGRAM STARTED BY <unknown> ******* ** ** ** PROGRAM PROCESS ID 398 ****** ******* ** PROGRAM STARTED IN /mnt CP2K| version string: CP2K version 2022.1(Development Version) CP2K|source code revision number: git: CP2K|cp2kflags: omp libint fftw3 libxc pexsi elpa parallel mpi3 scalapack cosm CP2K| a quip xsmm plumed2 spglib siriuslibvori libbqb CP2K|is freely available from https://www.cp2k.org/ CP2K|Program compiled at Thu Jul 28 10:46:55 UTC 2022 CP2K|Program compiled on 2e08f5a880fd CP2K|Program compiled for local CP2K|Data directory path /opt/cp2k/data CP2K|Input file name dbcsr.inp GLOBAL| Method name TEST GLOBAL| Project name PROJECT GLOBAL| Run type NONE GLOBAL| FFT library FFTW3 GLOBAL| Diagonalization library ELPA GLOBAL| Minimum number of eigenvectors forELPA usage 16 GLOBAL| Orthonormality check foreigenvectors DISABLED GLOBAL| Matrix multiplication library COSMA GLOBAL| All-to-all communication in singleprecision F GLOBAL| FFTs using library dependentlengths F GLOBAL| Grid backend AUTO GLOBAL| Global print level MEDIUM GLOBAL| MPI I/O enabled T GLOBAL| Total number of message passingprocesses 2 GLOBAL| Number of threads for thisprocess 1 GLOBAL| This output is from process 0 GLOBAL| Stack size for threads created byOpenMP (OMP_STACKSIZE) default GLOBAL| CPU model name Intel(R) Core(TM) i5-8250U CPU@ 1.60GHz GLOBAL| CPUID 1002 …… …… ******************************************************************************* * PERFORMANCETESTS * ******************************************************************************* Testing with sizes 13800 13800 13800 min/max blocksizes 23 23 transposed? F T =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 399 RUNNING AT 38a900c1646c = EXIT CODE: 9 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== YOUR APPLICATION TERMINATED WITH THE EXITSTRING: Killed (signal 9) This typically refers to a problem with yourapplication. Please see the FAQpage for debugging suggestions 应该怎么解决呢?请多指教。 |
ChemG 发表于 2022-7-7 10:13 知道怎么下载了,谢谢大佬 |
ChemG 发表于 2022-7-7 10:13 自己下载需要去哪里下载啊?刚接触这个,还不太了解 |
guoguoping199 发表于 2022-7-7 09:58 错误很明显,你的包没下载成功。自己下下来放到build文件夹里就行了 |
Acee 发表于 2022-7-7 09:19 ==================== Finding GCC from system paths ==================== path to gcc is /usr/bin/gcc path to g++ is /usr/bin/g++ path to gfortran is /usr/bin/gfortran Found include directory /usr/include Found lib directory /usr/lib64 Step gcc took 0.00 seconds. ==================== Getting proc arch info using OpenBLAS tools ==================== ERROR: (/home/sob/cp2k-8.1/tools/toolchain/scripts/get_openblas_arch.sh) failed to download https://www.cp2k.org/static/downloads/OpenBLAS-0.3.10.tar.gz ERROR: (/home/sob/cp2k-8.1/tools/toolchain/scripts/get_openblas_arch.sh, line 645) Non-zero exit code detected. ERROR: (./scripts/setup_buildtools.sh, line 38) Non-zero exit code detected. 这就是报错代码,麻烦您看一下这到底是什么原因啊,网络不行吗?不管是用这个方法,还是sob老师的方法,在CentOS和Ubuntu系统里都是报错这个代码,mpi也都提前安装了,数据库也安装了,但是到安装cp2k自己的库时就卡着了 |
guoguoping199 发表于 2022-6-26 23:09 贴上来看一下 |
本帖最后由 Acee 于 2022-7-7 12:48 编辑 guoguoping199 发表于 2022-6-26 23:09 |
本帖最后由 Acee 于 2022-7-7 12:49 编辑 guoguoping199 发表于 2022-6-26 23:09 |
guoguoping199 发表于 2022-6-26 23:09 用我修改的下载即用的版本试试。 签名中有链接。 |
guoguoping199 发表于 2022-6-26 23:09 诶,Linux系统和软件确实很难玩弄 |
在2.2.4这一步卡住了,报了一堆代码 |
Acee 发表于 2022-6-11 13:52 那这样的cp2k我想联用gmx的话是不是没戏? |
abin 发表于 2022-5-18 18:07 高,实在是高!docker代码太长太长了。 |
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