lyj714 发表于 2024-9-15 13:34 已解决，非常感谢 |
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本帖最后由 lyj714 于 2024-9-15 13:49 编辑 你这个不是cmake和fftw的问题，是gmx的问题。你要么换成2023版本，要么把你现在这个旧版本gmx改一下文件，应该是你gcc太新导致必须显式include头文件。你把gmx源码包中src/gromacs/utility/flags.h文件中#define GMX_UTILITY_FLAGS_H下面加一行#include <cstdint> |
| 参与人数Participants 1 | eV +2 | 收起 理由Reason |
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| + 2 | 谢谢 |
Santz 发表于 2024-9-15 11:15 应该就是图片中出现waring的部分，正常编译的时候是不会出现这个的；如果忽略这个，后续安装groamcs就会出现如下报错： In file included from /home/spuser/ydf/gromacs-2021.5/src/gromacs/analysisdata/dataframe.h:49, from /home/spuser/ydf/gromacs-2021.5/src/gromacs/analysisdata/dataframe.cpp:44: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:126:5: error: ‘uint64_t’ does not name a type 126 | uint64_t flags_; | ^~~~~~~~ /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:1:1: note: ‘uint64_t’ is defined in header ‘<cstdint>’; did you forget to ‘#include <cstdint>’? +++ |+#include <cstdint> 1 | /* /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In constructor ‘gmx::FlagsTemplate<FlagType>::FlagsTemplate()’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:73:23: error: class ‘gmx::FlagsTemplate<FlagType>’ does not have any field named ‘flags_’ 73 | FlagsTemplate() : flags_(0) {} | ^~~~~~ /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In constructor ‘gmx::FlagsTemplate<FlagType>::FlagsTemplate(FlagType)’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:75:36: error: class ‘gmx::FlagsTemplate<FlagType>’ does not have any field named ‘flags_’ 75 | FlagsTemplate(FlagType flag) : flags_(flag) {} | ^~~~~~ /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In member function ‘bool gmx::FlagsTemplate<FlagType>::test(FlagType) const’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:83:46: error: ‘flags_’ was not declared in this scope; did you mean ‘flag’? 83 | bool test(FlagType flag) const { return (flags_ & flag) != 0; } | ^~~~~~ | flag /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In member function ‘void gmx::FlagsTemplate<FlagType>::clearAll()’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:85:23: error: ‘flags_’ was not declared in this scope 85 | void clearAll() { flags_ = 0; } | ^~~~~~ /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In member function ‘void gmx::FlagsTemplate<FlagType>::set(FlagType)’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:87:31: error: ‘flags_’ was not declared in this scope; did you mean ‘flag’? 87 | void set(FlagType flag) { flags_ |= flag; } | ^~~~~~ | flag /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In member function ‘void gmx::FlagsTemplate<FlagType>::clear(FlagType)’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:89:33: error: ‘flags_’ was not declared in this scope; did you mean ‘flag’? 89 | void clear(FlagType flag) { flags_ &= ~flag; } | ^~~~~~ | flag /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In member function ‘gmx::FlagsTemplate<FlagType> gmx::FlagsTemplate<FlagType>::operator|(const gmx::FlagsTemplate<FlagType>&) const’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:106:40: error: ‘flags_’ was not declared in this scope 106 | return FlagsTemplate<FlagType>(flags_ | other.flags_); | ^~~~~~ /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In member function ‘gmx::FlagsTemplate<FlagType>& gmx::FlagsTemplate<FlagType>::operator|=(const gmx::FlagsTemplate<FlagType>&)’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:111:9: error: ‘flags_’ was not declared in this scope 111 | flags_ |= other.flags_; | ^~~~~~ /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In member function ‘gmx::FlagsTemplate<FlagType> gmx::FlagsTemplate<FlagType>::operator&(const gmx::FlagsTemplate<FlagType>&) const’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:117:40: error: ‘flags_’ was not declared in this scope 117 | return FlagsTemplate<FlagType>(flags_ & other.flags_); | ^~~~~~ /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In member function ‘gmx::FlagsTemplate<FlagType> gmx::FlagsTemplate<FlagType>::operator~() const’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:120:81: error: ‘flags_’ was not declared in this scope 120 | FlagsTemplate<FlagType> operator~() const { return FlagsTemplate<FlagType>(~flags_); } | ^~~~~~ /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h: In constructor ‘gmx::FlagsTemplate<FlagType>::FlagsTemplate(long unsigned int)’: /home/spuser/ydf/gromacs-2021.5/src/gromacs/utility/flags.h:124:51: error: class ‘gmx::FlagsTemplate<FlagType>’ does not have any field named ‘flags_’ 124 | explicit FlagsTemplate(unsigned long flags) : flags_(flags) {} | ^~~~~~ make[2]: *** [src/gromacs/CMakeFiles/libgromacs.dir/build.make:6943: src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o] Error 1 make[1]: *** [CMakeFiles/Makefile2:4371: src/gromacs/CMakeFiles/libgromacs.dir/all] Error 2 make: *** [Makefile:166: all] Error 2 |
sobereva 发表于 2024-9-15 00:38 Ubuntu版本信息如下： No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 24.04.1 LTS Release: 24.04 Codename: noble gcc版本信息如下： Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-linux-gnu/13/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 13.2.0-23ubuntu4' --with-bugurl=file:///usr/share/doc/gcc-13/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-13 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/gcc-13-uJ7kn6/gcc-13-13.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 13.2.0 (Ubuntu 13.2.0-23ubuntu4) 老师，您看一下，非常感谢您的指导 |
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不要把cmake和fftw的安装包作为附件上传，没意义还浪费论坛空间，别人在官网上都能直接下。我给删了 Ubuntu可以用apt-get装cmake 主动交代Ubuntu版本和gcc版本 |
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