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最近看了一些关于有类似膜体系的多层体系的模拟相关研究,总结了一下跑NPT系综时的.mdp的设置: integrator = md dt = 0.002 ;ps nsteps = 25000000 ;50 ns comm-grps = MEM SOL nstlist = 10 pbc = xyz periodic_molecules = yes rlist = 1.2 cutoff-scheme = Verlet verlet-buffer-tolerance = 0.002 coulombtype = PME rcoulomb = 1.2 vdwtype = cut-off rvdw-switch = 1.0 rvdw = 1.2 DispCorr = EnerPres tcoupl = V-rescale tc-grps = system tau-t = 0.1 ref-t = 293 pcoupl = C-rescale pcoupltype = semiisotropic tau-p = 5 compressibility = 0 4.5e-5 ref-p = 1.0 1.0 constraints = hbonds |
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