How to change the bond cutoff in vmd ?

zako · 发表于 Post on 2021-8-15 00:28:52

Hello everyone,
I performed an NCI analysis of an organic molecule linked to AlCl3, but the visualisation of the results using vmd shows that some bonds is missing(bond between Al and Oxygen & bonds between Cl and Al).
My question is : how to change the bond cutoff in vmd in purpose to show those bonds ?

sobereva · 发表于 Post on 2021-8-15 02:24:47

It is impossible to change cutoff of determining bonds in VMD. However, you can manually add or remove bonds. Simply choose "Mouse" - "Add/Remove Bonds" in VMD main window, then click two atoms, a new bond will be added or existing bond will be removed.

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[VMD] How to change the bond cutoff in vmd ?