Cylview transition state visualization

aitouna · 发表于 Post on 2019-11-29 18:13:28

本帖最后由 aitouna 于 2019-11-29 19:28 编辑

Hello everybody,
I used the software Cylview for the visualization of some Transition states, and i know how to set the bonds distansce intermoleculaire, but i don't know how to add a second bonds distance in the same transition state. Please see attached screenshot .

liyuanhe211 · 发表于 Post on 2019-11-29 20:07:25

It seems to me that the numbers in the screenshot are all added in post-processing using MSPaint, PowerPoint, etc.

我本是个娃娃 · 发表于 Post on 2019-11-29 21:03:15

liyuanhe211 发表于 2019-11-29 20:07
It seems to me that the numbers in the screenshot are all added in post-processing using MSPaint, Po ...

why not PS?

liyuanhe211 · 发表于 Post on 2019-11-29 21:43:26

我本是个娃娃发表于 2019-11-29 21:03
why not PS?

杀鸡焉用牛刀

aitouna · 发表于 Post on 2019-11-29 22:11:06

Dear All,
I don't think they used MsPaint or another tools you mentioned, just Cylview but i don't know how ?

sobereva · 发表于 Post on 2019-11-30 00:38:17

aitouna 发表于 2019-11-29 22:11
Dear All,
I don't think they used MsPaint or another tools you mentioned, just Cylview but i don't ...

CYLview itself cannot label two values, you have to use third-part softwares such as photoshop, powerpoint, etc.

Daniel_Arndt · 发表于 Post on 2019-11-30 01:00:58

Actually based on my experience it is more convenient to add the values of bond distances manually by MSPaint or PowerPoint, especially for figures in papers to be published.

aitouna · 发表于 Post on 2019-11-30 17:05:09

Dear Sobereva, Dear Daniel_Arndt,
Thank you all very very much. I would like to ask if there is a good alternative to Cylview give good figures for publication.

Sincerely,

zsu007 · 发表于 Post on 2019-11-30 18:57:57

See the Cylview Help!

sobereva · 发表于 Post on 2019-12-1 02:18:01

aitouna 发表于 2019-11-30 17:05
Dear Sobereva, Dear Daniel_Arndt,
Thank you all very very much. I would like to ask if there is a ...

Consider VMD and SAMSON, both of them are free and can give very nice graph. However, they are not able to directly load output file of any quantum chemistry code.

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[建模与可视化] Cylview transition state visualization

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