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[NAMD] 求助+replica-exchange umbrella sampling计算问题!

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本帖最后由 hhhnano 于 2020-4-16 11:32 编辑

我按照论坛上提供的namd编译方法成功编译了多线程NAMD,16线程计算测试成功:
mpirun -np 16 ./namd2 ./apoa1/apoa1.namd
但是在进行NAMD官方提供的replica-exchangeumbrella sampling教程计算时出现了问题,特请教大家,非常感谢:


mkdir output; cd output
mkdir {0..15}; cd ..
$ mpirun -np 16 namd2 +replicas 16 job0.conf+stdout output/%d/job0.%d.log

Charm++> No provisioning argumentsspecified. Running with a single PE.
        Use +auto-provision to fully subscribe resources or +p1 to silence thismessage.
Charm++: standalone mode (not using charmrun)
------- Partition 0 Processor 0 Exiting:Called CmiAbort ------
Reason: +partitions other than 1 is notallowed for multicore build
Charm++> Running in Multicore mode: 1threads (PEs)
[0] Stack Traceback:
  [0:0]namd2 0x14fcc37
  [0:1]namd2 0x516d93
  [0:2] namd2 0x50c772
  [0:3]libc.so.6 0x2afb01d1b505 __libc_start_main
  [0:4]namd2 0x4118f5
Charm++> No provisioning argumentsspecified. Running with a single PE.
        Use +auto-provision to fully subscribe resources or +p1 to silence thismessage.
Charm++: standalone mode (not using charmrun)
Charm++> Running in Multicore mode: 1threads (PEs)
------- Partition 0 Processor 0 Exiting:Called CmiAbort ------
Reason: +partitions other than 1 is notallowed for multicore build
[0] Stack Traceback:
  [0:0]namd2 0x14fcc37
  [0:1]namd2 0x516d93
  [0:2]namd2 0x50c772
  [0:3]libc.so.6 0x2b28394c7505 __libc_start_main
  [0:4]namd2 0x4118f5
Charm++> No provisioning argumentsspecified. Running with a single PE.
        Use +auto-provision to fully subscribe resources or +p1 to silence thismessage.
Charm++: standalone mode (not using charmrun)
Charm++> Running in Multicore mode: 1threads (PEs)
------- Partition 0 Processor 0 Exiting:Called CmiAbort ------
Reason: +partitions other than 1 is not allowedfor multicore build

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