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各位老师好,想请教一个关于使用CP2K 计算过渡态的问题。我想先用CINEB方法 计算几步,然后选一个插点结构作为初猜,进行dimer运算。
但是在用NEB时有些疑问。
1.我用idpp脚本插了6个点,这些结构是不是都可以写入 &Replica 中,(我看见官网的算例只是写入了初末态结构或者部分插点)
把这些插的构象写入INP 会对计算有帮助么?还有这个顺序有讲究么?(我是按 初,末,1,2,3,4,5,6这样的顺序写的)
2.提交命令没1分钟就停了。.out出现如下提示:(cp2k8.2)
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID 1220991 RUNNING AT gd09
= EXIT CODE: 9
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Killed (signal 9)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
各位老师有遇到过么?(好像是说内存不够,但是不太理解为啥会这样)
很有可能是INP没写对。(附件上传inp和插点生成的路径轨迹)
打搅啦QaQ
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movie.xyz
190.82 KB, 下载次数 Times of downloads: 13
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aoo.inp
2.64 KB, 下载次数 Times of downloads: 39
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