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本帖最后由 pengliyuan 于 2023-10-21 18:43 编辑
用48核计算,em后进行npt(300K 1bar),体系分子成团报错
Fatal error:
2 particles communicated to PME rank 25 are more than 2/3 times the cut-off
out of the domain decomposition cell of their charge group in dimension x.
This usually means that your system is not well equilibrated.
因此,更改npt(300K 100bar)重新NPT,盒子里面的成团分子得到分散,但是出现新的报错信息
Fatal error:
1 of the 4785609 bonded interactions could not be calculated because some
atoms involved moved further apart than the multi-body cut-off distance
(1.06386 nm) or the two-body cut-off distance (1.6 nm), see option -rdd, for
pairs and tabulated bonds also see option -ddcheck
多次进行修改参数,不知道到底哪里出现了问题,望大佬告知
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图片1.png
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DIO.itp
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npt.log
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npt.mdp
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npt.sge.o26098
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topol.top
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