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OK I see. If I understand correctly, the phase transfer agent [BnNEt3]Cl and NaOH serve only to generate dichlorocarbene, right? Since this chemistry is extremely well-known, for most intents and purposes it is not necessary to study this step, and you can start your calculation from the reaction of CCl2 with your molecule.
If, for example, you want to know how much CCl2 was lost due to its reaction with excess [BnNEt3]OH, or your alkene is an anion that can also pair with [BnNEt3]+, then it may be necessary to include the [BnNEt3] cation in your calculations. This can be done by simply putting the [BnNEt3] cation close to the anion that you want to study, and (very important!) do a configurational search to deduce the optimal position of the [BnNEt3] cation. Putting [BnNEt3]+ at a random place near the anion without performing a configurational search is generally not acceptable, even if the structure is optimized and there is no imaginary frequency. Configurational searches cannot be done by Gaussian alone, but can be done with the help of external programs like CREST and Molclus, which are free and easy to learn. Moreover, it is also important to verify that the non-covalent complexation of [BnNEt3]+ with your anion is indeed thermodynamically favored (from Gibbs free energy calculations), since the complexation is enthalpically favored but entropically disfavored. If not, then you should not include [BnNEt3]+ in the calculation of that species. |
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