运行pmemd.cuda -O -i eq4.in -o eq4.out -p ../c_box.prmtop -c eq3_1.rst7 -r eq4.rst7 -inf eq4.info -ref eq3.rst7 -x eq4.dcd
发生报错
| ERROR: a must be in the range of 0.10000E+01 to 0.10000E+04!| ERROR: b must be in the range of 0.10000E+01 to 0.10000E+04!| ERROR: c must be in the range of 0.10000E+01 to 0.10000E+04! Input errors occurred. Terminating execution.
试了下用sander运行同个任务也报错
Ewald PARAMETER RANGE CHECKING: parameter a: (unit cell size) has value 0.11999E+04 This is outside the legal range Lower limit: 0.10000E+01 Upper limit: 0.10000E+04 Check ew_legal.h
应该是晶胞大小的问题,但这个参数要在哪里改呀 或者怎么加入in文件呀
现在in文件是这样的
7md.in &cntrl imin = 0, nstlim = 1000000, dt = 0.001, irest = 1, ntx = 5, ig = -1, temp0 = 298.0, ntc = 2, ntf = 2, tol = 0.00001, ntwx = 10000, ntwe = 0, ntwr = 1000, ntpr = 1000, cut = 8.0, iwrap = 0, ntt =3, gamma_ln=1.0, ntb = 2, ntp = 1, nscm = 0, barostat = 2, ntr=1, restraintmask=':1-543', restraint_wt=1. ioutfm=1, ntxo=2, / &ewald nfft1 = 128, nfft2 = 128, nfft3 = 128, /
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