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[GROMACS] 求助gmx_MMPBSA膜蛋白计算pb报错

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我使用Charmm-gui加膜网站加膜,gmx分子动力学之后进行gmx_MMPBSA,但是出现以下错误,特请教大神。
File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/bin/gmx_MMPBSA", line 8, in <module>
    sys.exit(gmxmmpbsa())
  File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/lib/python3.9/site-packages/GMXMMPBSA/app.py", line 98, in gmxmmpbsa
    app.make_prmtops()
  File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/lib/python3.9/site-packages/GMXMMPBSA/main.py", line 682, in make_prmtops
    self.FILES.mutant_receptor_prmtop, self.FILES.mutant_ligand_prmtop) = maketop.buildTopology()
  File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/lib/python3.9/site-packages/GMXMMPBSA/make_top.py", line 125, in buildTopology
    tops = self.gmxtop2prmtop()
  File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/lib/python3.9/site-packages/GMXMMPBSA/make_top.py", line 574, in gmxtop2prmtop
    com_amb_prm = parmed.amber.AmberParm.from_structure(com_top)
  File "/share/home/yangmk/.local/lib/python3.9/site-packages/parmed/amber/_amberparm.py", line 288, in from_structure
    raise TypeError('Cannot instantiate an AmberParm from unknown functional')
TypeError: Cannot instantiate an AmberParm from unknown functional
Exiting. All files have been retained

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发表于 Post on 2024-10-29 11:47:54 | 只看该作者 Only view this author
楼主解决了吗?

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