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[Lammps] 求助在使用lammps计算原子受力和cp2k计算出的原子受力为什么相差很远?

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在npt系综下用lammps跑了64个水,dump出了其中一步的192个原子的每个原子的坐标(xu yu zu)和受力再用cp2k使用之前lammps跑出来的坐标作为输入文件,计算原子受力,发现和lammps跑出来的受力相差很大。
不知道原因何在?
cp2k的输入文件如下:

&GLOBAL
  PROJECT H2O_64
  RUN_TYPE ENERGY_FORCE
  PRINT_LEVEL LOW
&END GLOBAL
&FORCE_EVAL
  METHOD Quickstep
  &SUBSYS
    &KIND H
      ELEMENT        H
      BASIS_SET DZVP-GTH-PBE
      POTENTIAL GTH-PBE-q1
    &END
    &KIND O
      ELEMENT  O
      BASIS_SET DZVP-GTH-PBE
      POTENTIAL GTH-PBE-q6
    &END
    &CELL
      A   12.50000000 0.000000000 0.00000000
      B   0.00000000  12.500000000 0.00000000
      C   0.00000000  0.000000000 12.50000000
    &END CELL
    &COORD
...............
    &END COORD
  &END SUBSYS
  &DFT
    BASIS_SET_FILE_NAME   BASIS_SET
    POTENTIAL_FILE_NAME   POTENTIAL
    &QS
      EPS_DEFAULT 1.0E-10
    &END QS
    &MGRID
      NGRIDS 4
      CUTOFF 300
      REL_CUTOFF 60
    &END MGRID
    &XC
      &XC_FUNCTIONAL PBE
      &END XC_FUNCTIONAL
    &END XC
    &SCF
      SCF_GUESS ATOMIC
      EPS_SCF 1.0E-7
      MAX_SCF 250
      &DIAGONALIZATION  ON
        ALGORITHM STANDARD
      &END DIAGONALIZATION
      &MIXING
        METHOD BROYDEN_MIXING
        ALPHA 0.4
        NBROYDEN 8
      &END MIXING
    &END SCF
  &END DFT
  &PRINT
    &FORCES ON
    &END FORCES
  &END PRINT
&END FORCE_EVAL

cp2k输出的原子的力:


     X              Y              Z
  -0.01180416    -0.00947433     0.00009280
   0.00461240     0.00693771     0.01405241
   0.00649282     0.00608651    -0.00471809
  -0.00882626     0.00244431     0.01029087
   0.01144248    -0.00331861    -0.00479179
  -0.00808270     0.00514814     0.00445578
   0.02276698     0.01463376    -0.01567918
  -0.01472958     0.00415853    -0.00640857
   0.00274844    -0.00177449     0.00983559
   0.00272448     0.00697559    -0.00699033
   0.01592336     0.00905169     0.00280767
  -0.00633229    -0.01531366     0.00488902
  -0.02415738    -0.01541519    -0.01855988
   0.00787147    -0.00610572     0.00389036
  -0.01333128    -0.00675795     0.01151267
   0.01948978    -0.02261788    -0.01462103
  -0.02238749    -0.01308302     0.00238998
  -0.01095713     0.00859275     0.00501313
   0.02911774    -0.00173706    -0.01483974
   0.00495808    -0.00206518    -0.00404993
  -0.01458444    -0.00168715     0.01086497
   0.03162778     0.00590188     0.00462930
  -0.00508093    -0.00352300    -0.01384917
   0.00624191     0.01301030    -0.00848451
  -0.03064773    -0.01396991     0.00213121
   0.00564104    -0.00822721     0.01573560
  -0.00009717    -0.00604705    -0.01120183
   0.00382015     0.02132859     0.00188041
   0.01095801    -0.01993392    -0.00015673
  -0.00849245     0.00751349    -0.00611196
  -0.00441125    -0.00512583    -0.01080087
  -0.01123964    -0.01167021     0.00073713
   0.01092550     0.00482001     0.01223057
   0.11758795     0.01885645     0.03341615
   0.00001769    -0.01639019     0.00754579
   0.00265773     0.01030622    -0.00398979
  -0.06806217    -0.02703850    -0.05637410
  -0.00630899    -0.02132593    -0.00906896
  -0.00145728     0.01349754     0.00183068
  -0.02254602     0.05880270    -0.01149041
   0.01342575     0.00744906     0.00712321
  -0.00931994     0.00788021    -0.00291137
  -0.00459316     0.01178283    -0.00603818
  -0.00577463     0.01343656     0.00122575
   0.01385297    -0.00711531     0.00316190
  -0.00880731    -0.00280822     0.01171904
  -0.00510567     0.00644322     0.00026523
   0.01080895     0.00208982    -0.00802652
  -0.01457090     0.01893133     0.01989240
  -0.00044172    -0.00442618    -0.00172554
   0.00699484    -0.00221584    -0.01144351
  -0.00987601     0.02086276    -0.00689639
   0.00402554    -0.00524899    -0.00749164
  -0.00250286    -0.00597626     0.00897151
  -0.01333811     0.04793792     0.01640693
  -0.02172706    -0.00961964    -0.00095669
   0.00585735    -0.00158146     0.00171751
   0.06191148     0.03737715     0.03782585
   0.02448239    -0.02261070     0.01384988
  -0.00115778     0.00107981    -0.00935772
  -0.01568526    -0.00266745     0.01001606
   0.00666023    -0.00601678     0.00354292
   0.00116816     0.00171566    -0.01088657
  -0.00205349     0.02589269    -0.00357042
   0.00133602     0.01291006     0.01860647
   0.00146528    -0.01314921    -0.01157843
  -0.00240382    -0.01065305     0.00577251
   0.00435775    -0.01092002     0.00742344
   0.00174918     0.01164058    -0.01095139
   0.01807938     0.02386804     0.01500136
   0.00174947    -0.00506651    -0.01409610
   0.01179033    -0.00626753     0.01078291
   0.00015313    -0.03029781     0.01605678
   0.01772987     0.00103671    -0.01344518
  -0.01210939     0.00832150     0.01169189
  -0.02603242     0.00238003    -0.00120027
   0.00549580     0.00644885    -0.00329876
   0.00397316    -0.00134304     0.01097614
  -0.00585222     0.00197533    -0.00076329
  -0.00255742    -0.00780377     0.00287132
   0.01154066     0.00786834     0.00503495
  -0.00190869    -0.00307569     0.01445035
   0.01177281    -0.00161277    -0.00358145
  -0.00294304     0.00529393    -0.00779288
  -0.01328258     0.00313530     0.00255141
  -0.00679958    -0.01102164    -0.00058409
   0.01579795     0.00584884    -0.00823377
   0.01900272     0.01470881     0.01547170
  -0.00545435    -0.00206689     0.00841694
  -0.00056911    -0.00619195    -0.01073551
  -0.01970777     0.01457995     0.01085824
  -0.01159988     0.00647203    -0.00281798
   0.00125754     0.00873239    -0.01063460
   0.01537396    -0.01506806    -0.01308392
  -0.00330130    -0.00414615    -0.00161052
  -0.00361306     0.00033505     0.00367627
  -0.00582276    -0.01582990     0.01629726
   0.00656337    -0.00412545     0.01198411
  -0.00737124    -0.01522744    -0.01086291
   0.00225676    -0.00497153     0.00322452
  -0.00213346     0.00966229     0.00903019
  -0.00381205    -0.00387392    -0.01089281
   0.00034200    -0.00150554    -0.02740168
   0.00129765     0.00661299     0.01498111
  -0.00501445    -0.00432241     0.00869826
  -0.07717324     0.02982794    -0.03743347
  -0.00469977    -0.01053566    -0.02055699
  -0.01271928     0.02096625    -0.01428546
  -0.00109373    -0.00087692    -0.01684590
  -0.01456214     0.01601233     0.00324538
  -0.00453501    -0.00151509     0.00769697
   0.03180975    -0.05488362     0.00689544
  -0.00702730    -0.00808480     0.00578228
   0.01093701     0.00178877    -0.00682626
   0.00393113    -0.00668527    -0.00447867
  -0.01122583    -0.00977128     0.01765771
   0.01375475     0.00501745    -0.01478636
  -0.01021932    -0.00561137     0.00393286
   0.00721335     0.00084762    -0.00172045
  -0.00255564     0.00576576    -0.00831212
  -0.02661427    -0.01799092     0.02427396
  -0.00639004    -0.00300647     0.00722896
   0.01728982    -0.01038121     0.00011497
   0.00806311    -0.00717911    -0.00510678
  -0.01132501     0.00474118     0.00979919
   0.02446933    -0.00587237    -0.00535973
  -0.02686773     0.04791514    -0.02575837
  -0.02649585     0.01042376     0.02105699
   0.00158272    -0.01247085     0.01077030
  -0.01226123    -0.02554698    -0.01148727
   0.01514330     0.00330346     0.00975083
  -0.00141478     0.01149877    -0.00221237
   0.00958976     0.01369107     0.00241267
   0.00644213     0.00175643     0.00755009
   0.00526984    -0.01216759    -0.01070264
   0.00791960    -0.00083026     0.00753728
   0.00052973     0.00565386    -0.00611887
  -0.01665249    -0.00154672     0.00110883
   0.00298006     0.01481557     0.00064993
  -0.01454122    -0.01153507    -0.00312155
  -0.00262985     0.00264206    -0.01035493
  -0.00131639     0.00124169     0.00038285
  -0.00097274     0.00216918    -0.01241947
   0.00434852    -0.00780616     0.01758833
  -0.00854574     0.01146388    -0.01257065
   0.00108541     0.00304558    -0.00969068
   0.00117463    -0.00211640     0.01255743
   0.00516930     0.01803012     0.00579198
   0.00056173    -0.00741113    -0.00586216
   0.00073791     0.00115723     0.00009979
  -0.00715272    -0.01332519     0.01792602
  -0.00281015     0.01617981    -0.00290244
   0.00657475    -0.00293029    -0.00677529
   0.00439069     0.01210093     0.00439227
   0.00076360     0.01299325    -0.01672909
   0.00385338    -0.01495694     0.01227926
   0.00458475    -0.00277093     0.00431398
   0.00279207    -0.00880956    -0.00933793
   0.00712268    -0.00132197     0.01067710
   0.01584112    -0.01861134     0.00997228
  -0.00947918     0.01339478     0.00278743
   0.00354137     0.01261230     0.00033015
  -0.00594440    -0.00358586     0.00923135
   0.00192318     0.02437785     0.00252102
   0.00786701    -0.01548325    -0.00559437
  -0.00081658    -0.00877708     0.00680610
   0.00980689     0.00923437    -0.01593478
  -0.00547265    -0.01300730     0.00594859
  -0.01488152     0.02544242    -0.00712882
   0.00706766    -0.00250093    -0.01156639
  -0.00103359     0.00336471     0.00410150
   0.00156369     0.00393068     0.02486820
  -0.01345908     0.00379526    -0.00595106
   0.01443559    -0.00594145    -0.01338414
  -0.00268902     0.00195484    -0.01775579
   0.01185149    -0.00001909     0.01939741
   0.00537589     0.00250343    -0.00929112
   0.00007731    -0.00989971     0.01147798
   0.00611378    -0.01010926     0.00501681
  -0.00108038     0.00448881    -0.01400871
   0.00519952    -0.05603702     0.00955577
   0.01564605    -0.00898920    -0.02142320
   0.00632408     0.01104275     0.01115407
  -0.01596078     0.00988344     0.01092374
   0.01215853     0.00714692    -0.00969817
  -0.01276528    -0.01752589    -0.00121301
   0.00237597    -0.00648959    -0.00006821
   0.00396172     0.01283218    -0.00038003
   0.00478881    -0.02547039    -0.00167158
  -0.00094063     0.00786152     0.00267421
   0.00571947    -0.00297622     0.00421074
  -0.00395976     0.00516708    -0.00765990


lammps输出的坐标和力(xu yu zu fx fy fz)
O -16.6727 4.90644 9.97526 -8.43476 10.3694 -6.05623
H -17.2627 4.98481 9.17172 0.795288 -2.85024 -0.928224
H -15.9941 5.6409 9.96342 -4.33983 3.31827 -0.675561
O -46.8824 9.18247 -17.6343 -9.08555 1.32739 -9.93931
H -47.8476 9.44373 -17.6409 0.803344 2.11652 2.42756
H -46.3145 10.0054 -17.6164 2.43023 -2.96208 4.90625
O 11.7666 48.2451 10.2128 11.0679 10.6847 -6.67194
H 12.4475 48.6072 10.8493 -2.94097 4.73048 0.185431
H 11.3787 47.4014 10.584 3.39866 -0.333681 -0.604447
O 12.0613 2.93749 15.6814 -2.38269 1.34074 -10.8866
H 11.8771 2.06963 16.1428 0.623832 2.01382 1.08363
H 12.9889 2.92621 15.308 1.86364 1.65372 6.1888
O 21.8323 13.0695 48.511 0.0291541 8.16173 -2.96578
H 22.4872 13.1071 49.2657 -0.393063 2.55866 -0.313702
H 21.506 12.1309 48.3993 5.70589 0.403478 -1.28578
O -42.1592 -34.7397 6.12957 1.9456 6.57305 -9.09347
H -41.1858 -34.9536 6.04798 0.486839 2.92014 1.36525
H -42.5597 -34.6556 5.2171 1.75372 -0.801974 -1.09384
O 51.0645 74.7064 6.04609 5.11472 -0.438576 2.48253
H 50.6818 73.9293 6.5458 -3.51216 0.756738 -1.87893
H 51.585 75.2836 6.67528 -5.0359 0.312711 1.96927
O 60.5049 51.0327 -73.9551 5.69554 -3.02122 1.01924
H 59.6216 50.6923 -73.6328 1.02416 0.781162 -1.95215
H 60.8327 51.7469 -73.3366 0.108649 -0.936273 -0.392105
O 1.63028 -52.9204 24.4065 0.420322 -2.65462 -1.12845
H 0.642172 -52.8721 24.2605 1.08884 1.89086 0.130493
H 1.81496 -53.1718 25.3566 -0.484048 0.672959 -0.917374
O -6.2404 -2.33545 -44.113 1.50522 -1.53108 4.87876
H -6.84192 -1.96309 -43.4062 -1.19213 -1.69708 -0.974827
H -5.92945 -1.59568 -44.7096 -3.66517 -1.51267 -1.40472
O -7.38607 -17.9939 -8.59357 1.10551 6.69057 -1.34793
H -8.16983 -17.3961 -8.42511 0.661365 0.714543 0.716299
H -6.75784 -17.9466 -7.81698 2.18982 1.40394 -2.99298
O 103.434 53.8533 16.3231 -1.43495 6.46706 -9.6344
H 103.656 54.7423 15.9229 0.574616 -1.53713 7.16078
H 103.256 53.963 17.3011 -3.36556 -10.786 -0.820116
O -2.01459 -20.3519 29.7543 0.81434 8.57526 -3.3105
H -2.21333 -21.148 30.3259 1.56564 3.1358 3.84504
H -1.36337 -20.6086 29.0401 0.423683 -1.77483 1.10857
O 6.93048 44.4607 -68.858 -6.86998 11.52 -2.43762
H 6.46213 45.3321 -69.004 4.50512 0.136212 0.408457
H 7.91948 44.6083 -68.8664 -1.88105 -4.23071 0.334753
O 1.81201 20.6607 -10.3273 -3.05446 12.8652 4.69933
H 1.29857 19.803 -10.356 8.09242 -1.79369 -2.43428
H 2.20854 20.7815 -9.41726 1.14326 -0.448576 -2.36192
O -57.2683 23.3186 -16.8895 8.51216 6.39178 1.69349
H -56.8704 24.2235 -17.0411 0.165692 0.345641 -0.65392
H -57.4617 23.1984 -15.9158 -1.74813 2.37112 -0.839222
O -9.85299 38.2063 -27.1585 -3.10215 3.05987 -2.45784
H -9.48669 39.1063 -26.9221 -0.536085 0.313431 -0.611279
H -10.6352 38 -26.5707 4.3043 -2.97158 3.94217
O -43.7367 13.6491 7.80656 -16.0532 -6.04596 1.20747
H -43.1704 14.1159 7.12723 -0.840212 -4.77419 1.726
H -43.5139 13.9926 8.71892 4.11976 -4.27066 -0.203319
O -44.1901 -4.27664 -16.2857 2.68867 -0.858206 3.06912
H -43.4159 -4.64127 -16.803 -1.96566 -0.668346 -1.06937
H -44.3641 -3.33293 -16.567 -2.86412 -2.61731 -2.41935
O 43.4357 6.72047 13.3587 -8.65173 -7.8148 1.48991
H 43.281 6.53551 14.3292 -0.948764 7.94119 1.49384
H 42.6626 7.2368 12.9904 5.99683 2.97763 -3.20455
O -19.1992 -10.7883 -24.8109 6.11633 2.57708 -7.29312
H -19.3051 -9.82567 -25.06 3.14679 1.53843 5.08262
H -20.0172 -11.0994 -24.3271 1.01546 0.502934 0.656141
O -12.3692 -30.834 -42.4986 4.30097 2.9747 2.2358
H -11.872 -30.7861 -41.6323 0.104291 0.679036 -0.193638
H -12.615 -29.9106 -42.7934 -1.70477 -2.16652 0.404031
O 26.1739 17.9295 -32.2664 1.69113 -0.328158 -3.77172
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O -5.47596 1.6814 47.658 -1.63274 -2.84699 -0.975596
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O -18.0778 17.1636 82.4884 8.48204 1.08666 -0.0271131
H -17.784 16.2659 82.1598 -2.98382 -0.0097772 -2.3018
H -18.3761 17.7209 81.7135 0.451362 2.67302 2.44639
O -29.3151 54.0138 -60.8446 7.41549 -4.00935 2.35505
H -29.8927 54.4622 -61.5267 -1.52608 2.72673 4.68758
H -28.69 53.3809 -61.3013 -1.83743 2.17102 -3.36322
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H -45.7703 61.7005 -39.5375 -3.77702 2.09519 9.03008
H -46.4539 60.3214 -38.9922 2.58283 -2.06083 5.95178
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H -42.7986 16.9061 -63.6207 -3.94522 -1.88969 -3.48731
H -43.8754 17.704 -62.6877 2.6759 -0.936977 0.405726
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H -15.0093 5.84752 41.1563 -2.38732 -2.51388 -0.469787
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O -31.3654 49.5289 28.9005 1.08407 5.03518 2.03894
H -30.8195 50.2894 28.5488 -0.424876 0.518488 0.376874
H -32.2786 49.8576 29.1414 1.24784 -0.995746 2.00339
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H -10.3854 -51.7721 -10.3754 -0.56373 -0.568046 -3.55383
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H 73.2332 45.396 -25.3356 -2.5079 6.91468 -0.337321
O -50.1967 3.9529 58.8927 -3.92586 -1.18827 4.94952
H -50.3767 2.97018 58.8492 5.24991 -0.191518 -5.45364
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O -9.08038 6.07775 -66.3024 1.47005 -1.44033 3.86244
H -9.83196 6.31655 -65.6875 0.828937 1.68385 -1.0199
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H -17.1559 9.93305 -16.9578 2.26566 1.7121 -1.88409
H -15.9196 10.1742 -15.9186 -5.11311 -2.72054 -2.64416
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H 21.1876 6.03567 -5.2654 -0.621095 -0.286035 -3.1167
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H 11.6881 4.10387 48.2078 -0.569486 2.83091 -0.953678
H 10.7433 3.94602 49.5303 -1.23859 1.40027 -2.56628
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H 11.9406 -5.28523 14.08 -2.072 -7.61365 -3.62877
O -17.8426 10.4325 102.269 6.62044 4.9439 -2.58979
H -18.3737 10.8925 102.98 -0.15382 2.17412 -2.69757
H -18.1604 10.7325 101.369 -0.0577568 -6.06951 -0.329539
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H 10.3178 -10.6472 -17.8551 8.41148 5.65113 1.11544
H 10.6596 -10.7046 -19.4509 2.86616 1.05629 2.72346
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H 15.4453 -0.186711 -23.3828 -3.70879 3.26408 -0.50405
H 15.9038 1.18102 -22.6175 -3.91207 2.06139 -2.31813
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H -13.347 -12.6144 -45.8257 1.22093 0.253148 -1.22313
H -12.2324 -11.7787 -44.9738 -2.49279 -1.03636 2.75747
O 2.49767 -29.1323 -32.6681 1.44001 -5.5614 3.6797
H 2.60791 -28.7528 -31.7495 1.50291 -0.605427 -3.99467
H 2.04128 -30.0201 -32.6093 1.46215 3.12477 2.34792
O 8.51233 12.9299 26.4884 -5.52369 -2.43611 1.61384
H 8.21797 12.0202 26.7814 -0.0368416 0.555027 0.806911
H 7.74585 13.4052 26.0565 -1.02976 0.0542629 2.65936
O 45.7009 -26.4769 -1.6929 -7.65197 -14.1092 4.51117
H 46.1764 -27.2037 -1.19723 0.0388673 -0.426123 -1.13633
H 44.8141 -26.3057 -1.26354 1.71981 0.169332 2.48818
O 13.6534 31.5894 47.779 -1.85129 -4.52304 -5.0484
H 12.9897 31.0096 48.2514 1.00266 0.0691991 1.60055
H 13.8156 32.4168 48.3168 1.95924 -0.432107 -0.769919


谢谢各位大佬!
还有就是用cp2k计算时,什么时候需要加色散矫正呢。

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 楼主 Author| 发表于 Post on 2020-3-26 10:38:49 | 只看该作者 Only view this author
sobereva 发表于 2020-3-25 21:14
kcal转成J,埃转成米
都变成了SI单位,再加上mole=6.02214179*10^23,很容易就弄成nN了

谢谢您,受教了

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发表于 Post on 2020-3-25 21:14:32 | 只看该作者 Only view this author
buct_hjh 发表于 2020-3-25 20:46
谢谢
想再问一下,lammps受力的单位为kcal/mole-angstrom
如何将real单位(kcal/mole-angstrom)下输出 ...

kcal转成J,埃转成米
都变成了SI单位,再加上mole=6.02214179*10^23,很容易就弄成nN了
北京科音自然科学研究中心http://www.keinsci.com)致力于计算化学的发展和传播,长期开办极高质量的各种计算化学类培训:初级量子化学培训班中级量子化学培训班高级量子化学培训班量子化学波函数分析与Multiwfn程序培训班分子动力学与GROMACS培训班CP2K第一性原理计算培训班,内容介绍以及往届资料购买请点击相应链接查看。这些培训是计算化学从零快速入门以及进一步全面系统性提升研究水平的高速路!培训各种常见问题见《北京科音办的培训班FAQ》
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 楼主 Author| 发表于 Post on 2020-3-25 20:46:41 | 只看该作者 Only view this author
sobereva 发表于 2020-3-25 15:15
一个基于力场方法,一个基于量子力学方法,差异大是情理之中。另外注意是不是单位有差异。
色散校正问题看 ...

谢谢
想再问一下,lammps受力的单位为kcal/mole-angstrom
如何将real单位(kcal/mole-angstrom)下输出的力转化为宏观单位的力(纳牛)

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发表于 Post on 2020-3-25 15:15:26 | 只看该作者 Only view this author
一个基于力场方法,一个基于量子力学方法,差异大是情理之中。另外注意是不是单位有差异。
色散校正问题看
谈谈“计算时是否需要加DFT-D3色散校正?”
http://sobereva.com/413http://bbs.keinsci.com/thread-9772-1-1.html
北京科音自然科学研究中心http://www.keinsci.com)致力于计算化学的发展和传播,长期开办极高质量的各种计算化学类培训:初级量子化学培训班中级量子化学培训班高级量子化学培训班量子化学波函数分析与Multiwfn程序培训班分子动力学与GROMACS培训班CP2K第一性原理计算培训班,内容介绍以及往届资料购买请点击相应链接查看。这些培训是计算化学从零快速入门以及进一步全面系统性提升研究水平的高速路!培训各种常见问题见《北京科音办的培训班FAQ》
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Google Scholar:https://scholar.google.com/citations?user=tiKE0qkAAAAJ
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发表于 Post on 2020-3-25 09:46:44 | 只看该作者 Only view this author

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