如何快速将itp文件中每个氢原子放在其相连的重原子之后

chaojichaoji

版本：2023.3
GPU算MD时提示Update groups不可用因此不可以调用GPU。官方论坛上讲应该将每个氢原子放在其相连的重原子之后。
手册也提到了如下内容。
请问大家有没有什么快速的方法将ipt文件中每个氢原子放在其相连的重原子之后呢？
感谢大家！


To completely avoid communication for constraints and/or to have the update run on a GPU, the system needs to support so-called “update groups” (or no constraints at all). Update groups are supported when all atoms involved in coupled constraints are coupled directly to one central atom and consecutively ordered, not interdispersed with non-constrained atoms. An example is a compactly described methyl group. For atomistic force fields with constraints = h-bonds this means in practice that in the topology hydrogens come adjacent to their connected heavy atom. In addition, when virtual sites are present, the constructing atoms should all be constrained together and the virtual site and constructing atoms should be consecutive, but the order does not matter. The TIP4P water model is an example of this. Whether or not update groups are used is noted in the log file. When they cannot be used, the reason for disabling them is also noted.

chaojichaoji

已解决，感谢sob老师的Multiwfn！！！没想到还有这么多功能！！