How to find the id of a protein ?

zako · 发表于 Post on 2020-10-8 07:53:09

Hello every body,
A colleague sent me a pdb file that i don't know his id, how can i find the id of the protein in the literature ? Please, i need help, it's very important.

Protein.pdb (258.71 KB, 下载次数 Times of downloads: 8)

liyuanhe211 · 发表于 Post on 2020-10-8 09:56:18

Convert the pdb file to a sequence string (using single-letter abbreviation). Then search protein by sequence.

zsu007 · 发表于 Post on 2020-10-8 10:12:06

Use the amino acid residue sequence of protein to the website https://www.rcsb.org/ for sequence search in advanced search, and you can get the results you want.
My search results are 146 Structures：7CHC,6XDG,6XM0,7CHB,6VXX,6ZHD,6XE1,7C01,7CHH,6XM5,7CHE,6XLU,6XM3,6VYB,6XM4,7CHF,7JWB,7BWJ,7C8D,6ZGI,6ZP2,6ZP0,6ZGG,6ZP1,6ZGH

zako · 发表于 Post on 2020-10-8 14:05:38

Dear Mrs liyuanhe211, zsu007,
Thank you very much for your helping answers, but as zsu007 mention there is 146 differents structures, how can i choose the right one ?

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