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本帖最后由 斯水城 于 2021-5-13 21:21 编辑
高斯算不同溶剂下的自由能变,先优化频率分析后再算高精度单点。提交服务器脚本如下:
但是在第一步结构优化得到的.chk文件直接与下一步计算要用的.com文件放在一起会出现错误:%nprocs=12 Will use up to 12 processors via shared memory.
%mem=3gb
%oldchk=1.chk
Copying data from "1.chk" to current chk file "/tmp/985713.tmpdir/scr/Gau-30047.chk"
IOpt= 2 FromEx=T IUOpen= 4 IOptOp= 5 NList= 0 IFRang= 0 IUIn= 4 IUOut= 2.
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#P B2PLYPD3/def2TZVP geom=allcheck
----------------------------------
1/29=7,38=1,172=1/1;
2/12=2,40=1/2;
3/5=44,7=101,11=9,14=-4,25=1,30=1,74=-60/1,2,3;
4//1;
5/5=2,38=5/2;
8/10=1/1;
9/16=-3/6;
6/7=2,8=2,9=2,10=2/1;
99/5=1,9=1/99;
Leave Link 1 at Thu May 13 14:58:54 2021, MaxMem= 402653184 cpu: 0.5 elap: 0.0
(Enter /share/apps/g16/A03/l101.exe)
Structure from the checkpoint file: "/tmp/985713.tmpdir/scr/Gau-30047.chk"
FileIO operation on non-existent file.
FileIO: IOper= 2 IFilNo(1)=-20502 Len= 100 IPos= 4 Q= 202040064
dumping /fiocom/, unit = 1 NFiles = 16 SizExt = 524288 WInBlk = 512
defal = F LstWrd = 659456 FType=2 FMxFil=10000
Number 0 501 502 598 801 988
Base 250880 43520 142336 146944 250368 65024
End 659456 44520 146441 146947 250374 135028
End1 659456 44544 146944 147456 250880 135168
Wr Pntr 250880 43520 142336 146944 250368 65024
Rd Pntr 250880 43520 142336 146944 250368 135028
Length 408576 1000 4105 3 6 70004
Int.Num 1 2 3 4 5 6
Number 989 991 992 993 994 995
Base 44544 135680 135168 43008 40448 42496
End 64544 142242 135178 43208 40478 42516
End1 65024 142336 135680 43520 40960 43008
Wr Pntr 44544 135680 135168 43008 40448 42496
Rd Pntr 44544 142242 135178 43208 40478 42516
Length 20000 6562 10 200 30 20
Int.Num 7 8 9 10 11 12
Number 996 997 998 999
Base 41472 41984 40960 147456
End 41672 42130 41160 249960
End1 41984 42496 41472 250368
Wr Pntr 41472 41984 41160 147456
Rd Pntr 41672 42130 41160 149960
Length 200 146 200 102504
Int.Num 13 14 15 16
dumping /fiocom/, unit = 2 NFiles = 1 SizExt = 0 WInBlk = 512
defal = F LstWrd = 65536 FType=2 FMxFil=10000
Number 0
Base 40448
End 65536
End1 65536
Wr Pntr 40448
Rd Pntr 40448
Length 25088
Int.Num 1
dumping /fiocom/, unit = 3 NFiles = 1 SizExt = 524288 WInBlk = 512
defal = F LstWrd = 65536 FType=2 FMxFil=10000
Number 0
Base 40448
End 65536
End1 65536
Wr Pntr 40448
Rd Pntr 40448
Length 25088
Int.Num 1
FileIO operation on non-existent file.
FileIO: IOper= 2 IFilNo(1)=-20502 Len= 100 IPos= 4 Q= 202040064
Error termination in NtrErr:
NtrErr Called from FileIO.
百度错误原因后发现可能的解决方案如下:
“Operation on .chk file was specified (e.g. geom=check, opt=restart), but .chk was not found. Check that:-
%chk= was specifed in .inp-
.chk has the same name as .inp-
.chk is in the same directory as .inp -
run transports .chk to temporary folder upon job start. Run s downloaded here should do this. -”可能我需要输入的.com文件和.chk文件存放的目录有问题(原先这两个文件都放在同一目录GAUSS_RUNDIR=/tmp/$LSB_JOBID.tmpdir下)遂改运行脚本如下:
,将.chk文件复制到“GAUSS_SCRDIR”目录下,但是还是没有得到正常结束的.log文件,输出文件结果如下:Gaussian 16: ES64L-G16RevA.03 25-Dec-2016
13-May-2021
******************************************
%nprocs=12
Will use up to 12 processors via shared memory.
%chk=6NEW.chk
%mem=3gb
%oldchk=6.chk
Copying data from "1.chk" to current chk file "1NEW.chk"
IOpt= 2 FromEx=T IUOpen= 4 IOptOp= 5 NList= 0 IFRang= 0 IUIn= 4 IUOut= 2.
Old file "6.chk" could not be opened.
Error termination via Lnk1e in /share/apps/g16/A03/l1.exe at Thu May 13 15:52:25 2021.
Job cpu time: 0 days 0 hours 0 minutes 0.1 seconds.
Elapsed time: 0 days 0 hours 0 minutes 0.0 seconds.
File lengths (MBytes): RWF= 1 Int= 0 D2E= 0 Chk= 1 Scr= 1
说“Old file "6.chk" could not be opened.”,因此想请教各位老师,.com文件和.chk文件应该放在哪个目录下、为什么同样在linux下生成的.chk文件在linux上无法打开
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