CentOS7下安装GROMACS（GPU+AVX512）的经历分享

lisanoid

snljty 发表于 2021-12-26 05:55
你这个报错没有有价值信息。说清操作所有涉及到的版本和输入，贴更完整的信息。

多谢提醒
我重新安装一遍，出现了类似错误，我简单搜索了一下好像是内存不足 ，安装具体信息如下：
/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/xg++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/ -B/usr/local/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/sob/gcc-5.5.0/libstdc++-v3/libsupc++ -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -c   -g -O2 -gtoggle -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc -I../../gcc/. -I../../gcc/../include -I../../gcc/../libcpp/include -I/sob/gcc-5.5.0/gcc-build-5.5.0/./gmp -I/sob/gcc-5.5.0/gmp -I/sob/gcc-5.5.0/gcc-build-5.5.0/./mpfr -I/sob/gcc-5.5.0/mpfr -I/sob/gcc-5.5.0/mpc/src  -I../../gcc/../libdecnumber -I../../gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc/../libbacktrace -I/sob/gcc-5.5.0/gcc-build-5.5.0/./isl/include -I/sob/gcc-5.5.0/isl/include  -o ira-color.o -MT ira-color.o -MMD -MP -MF ./.deps/ira-color.TPo ../../gcc/ira-color.c
/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/xg++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/ -B/usr/local/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/sob/gcc-5.5.0/libstdc++-v3/libsupc++ -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -c   -g -O2 -gtoggle -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc -I../../gcc/. -I../../gcc/../include -I../../gcc/../libcpp/include -I/sob/gcc-5.5.0/gcc-build-5.5.0/./gmp -I/sob/gcc-5.5.0/gmp -I/sob/gcc-5.5.0/gcc-build-5.5.0/./mpfr -I/sob/gcc-5.5.0/mpfr -I/sob/gcc-5.5.0/mpc/src  -I../../gcc/../libdecnumber -I../../gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc/../libbacktrace -I/sob/gcc-5.5.0/gcc-build-5.5.0/./isl/include -I/sob/gcc-5.5.0/isl/include  -o ira-emit.o -MT ira-emit.o -MMD -MP -MF ./.deps/ira-emit.TPo ../../gcc/ira-emit.c
/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/xg++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/ -B/usr/local/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/sob/gcc-5.5.0/libstdc++-v3/libsupc++ -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -c   -g -O2 -gtoggle -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc -I../../gcc/. -I../../gcc/../include -I../../gcc/../libcpp/include -I/sob/gcc-5.5.0/gcc-build-5.5.0/./gmp -I/sob/gcc-5.5.0/gmp -I/sob/gcc-5.5.0/gcc-build-5.5.0/./mpfr -I/sob/gcc-5.5.0/mpfr -I/sob/gcc-5.5.0/mpc/src  -I../../gcc/../libdecnumber -I../../gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc/../libbacktrace -I/sob/gcc-5.5.0/gcc-build-5.5.0/./isl/include -I/sob/gcc-5.5.0/isl/include  -o ira-lives.o -MT ira-lives.o -MMD -MP -MF ./.deps/ira-lives.TPo ../../gcc/ira-lives.c
/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/xg++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/ -B/usr/local/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/sob/gcc-5.5.0/libstdc++-v3/libsupc++ -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -c   -g -O2 -gtoggle -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc -I../../gcc/. -I../../gcc/../include -I../../gcc/../libcpp/include -I/sob/gcc-5.5.0/gcc-build-5.5.0/./gmp -I/sob/gcc-5.5.0/gmp -I/sob/gcc-5.5.0/gcc-build-5.5.0/./mpfr -I/sob/gcc-5.5.0/mpfr -I/sob/gcc-5.5.0/mpc/src  -I../../gcc/../libdecnumber -I../../gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc/../libbacktrace -I/sob/gcc-5.5.0/gcc-build-5.5.0/./isl/include -I/sob/gcc-5.5.0/isl/include  -o jump.o -MT jump.o -MMD -MP -MF ./.deps/jump.TPo ../../gcc/jump.c
/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/xg++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/./prev-gcc/ -B/usr/local/x86_64-unknown-linux-gnu/bin/ -nostdinc++ -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -B/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include/x86_64-unknown-linux-gnu  -I/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/include  -I/sob/gcc-5.5.0/libstdc++-v3/libsupc++ -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/src/.libs -L/sob/gcc-5.5.0/gcc-build-5.5.0/prev-x86_64-unknown-linux-gnu/libstdc++-v3/libsupc++/.libs -c   -g -O2 -gtoggle -DIN_GCC    -fno-exceptions -fno-rtti -fasynchronous-unwind-tables -W -Wall -Wno-narrowing -Wwrite-strings -Wcast-qual -Wmissing-format-attribute -Woverloaded-virtual -pedantic -Wno-long-long -Wno-variadic-macros -Wno-overlength-strings   -DHAVE_CONFIG_H -I. -I. -I../../gcc -I../../gcc/. -I../../gcc/../include -I../../gcc/../libcpp/include -I/sob/gcc-5.5.0/gcc-build-5.5.0/./gmp -I/sob/gcc-5.5.0/gmp -I/sob/gcc-5.5.0/gcc-build-5.5.0/./mpfr -I/sob/gcc-5.5.0/mpfr -I/sob/gcc-5.5.0/mpc/src  -I../../gcc/../libdecnumber -I../../gcc/../libdecnumber/bid -I../libdecnumber -I../../gcc/../libbacktrace -I/sob/gcc-5.5.0/gcc-build-5.5.0/./isl/include -I/sob/gcc-5.5.0/isl/include  -o langhooks.o -MT langhooks.o -MMD -MP -MF ./.deps/langhooks.TPo ../../gcc/langhooks.c
make[3]: *** [s-attrtab] Killed
make[3]: *** Waiting for unfinished jobs....
rm gcc.pod
make[3]: Leaving directory `/sob/gcc-5.5.0/gcc-build-5.5.0/gcc'
make[2]: *** [all-stage2-gcc] Error 2
make[2]: Leaving directory `/sob/gcc-5.5.0/gcc-build-5.5.0'
make[1]: *** [stage2-bubble] Error 2
make[1]: Leaving directory `/sob/gcc-5.5.0/gcc-build-5.5.0'
make: *** [all] Error 2

shuiningzhu

lisanoid 发表于 2021-12-28 17:37
多谢提醒
我重新安装一遍，出现了类似错误，我简单搜索了一下好像是内存不足 ，安装具体信息如下：
/so ...

如果内存够大，swapoff -a，关闭交换分区，否则，扩大交换分区。