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模拟时,参考了amber的官网教程进行模拟https://ambermd.org/tutorials/basic/tutorial13/index.php
第五步最小化是输入了指令pmemd.cuda -O -i mini2.in -o mini2.out -p c_box.prmtop -c eq2.rst7 -r mini2.rst7 -inf mini2.info -ref eq2.rst7 -x mini2.dcd
发生报错
At line 783 of file /data/home/amber22_src/AmberTools/src/sander/mdread1.F90 (unit = 5, file = 'mini2.in')
Fortran runtime error: End of file
Error termination. Backtrace:
#0 0x1509d4264d11 in ???
#1 0x1509d4265859 in ???
#2 0x1509d426653f in ???
#3 0x1509d44a9c4b in ???
#4 0x1509d44aaf2c in ???
#5 0x1509d44ada8e in ???
#6 0x1509d44adcfc in ???
#7 0x1509d44ade57 in ???
#8 0x5639bdf2b4f6 in ???
#9 0x5639bdef7fd0 in ???
#10 0x5639bdef705c in ???
#11 0x5639bdef70b8 in ???
#12 0x1509d4059082 in __libc_start_main
at ../csu/libc-start.c:308
#13 0x5639bdd2aded in ???
#14 0xffffffffffffffff in ???
这里使用的mini2.in文件是
Minimization of everything excluding backbone
&cntrl
imin = 1, maxcyc = 1000,
ncyc = 30, ntx = 1,
ntwe = 0, ntwr = 500, ntpr = 50,
ntc = 2, ntf = 2, ntb = 1, ntp = 0,
cut = 10.0,
ntr=1, restraintmask = "@CA,N,C,P",
restraint_wt = 10.,
ioutfm=1, ntxo=2,
/
感觉这个文件没有缺漏呀
然后用mpirun -np 32 sander -O -i mini2.in -o mini2.out -p c_box.prmtop -c eq2.rst7 -r mini2.rst7 -inf mini2.info -ref eq2.rst7 -x mini2.dcd试了试,还是这个报错
请问怎么解决呐
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