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超算上进行orca410(openmpi-3.1.3)的频率、优化计算时出错,百思不得其解,请教大家!:
体系19个原子(CHO)freq.inp
#
%pal nprocs 32 end
!UKS wb97x-d3 cc-pvdz freq
* xyz 0 2
*
log文件出现:
ORCA finished by error termination in GTOInt
Calling Command: mpirun -np 32 /public/home/dhua/soft/orca_4_1_0/orca_gtoint_mpi freq.int.tmp freq
[file orca_tools/qcmsg.cpp, line 453]:
.... aborting the run
.err文件
[b11r2n15:07499] *** Process received signal ***
[b11r2n15:07499] Signal: Segmentation fault (11)
[b11r2n15:07499] Signal code: Address not mapped (1)
[b11r2n15:07499] Failing at address: (nil)
[b11r2n15:07499] [ 0] /lib64/libpthread.so.0(+0xf5d0)[0x2b7e050f25d0]
[b11r2n15:07499] *** End of error message ***
[file orca_tools/qcmsg.cpp, line 453]:
.... aborting the run
real 0m0.917s
user 0m0.027s
sys 0m0.128s
提交脚本
#!/bin/bash
#SBATCH -J yhj
#SBATCH -p normal
#SBATCH -N 1
#SBATCH -n 32
#SBATCH --error=%J.err
#SBATCH --output=%J.out
module load compiler/intel/2020.1.217
export PATH=/public/home/dhua/soft/openmpi-3.1.3/bin:/public/home/dhua/soft/orca_4_1_0:$PATH
export LD_LIBRARY_PATH=/public/home/dhua/soft/openmpi-3.1.3/lib:/public/home/dhua/soft/orca_4_1_0:$LD_LIBRARY_PATH
export orcapath=/public/home/dhua/soft/orca_4_1_0
for INPUT in *.inp
do
echo "ORCA job start at" 'date'
time $orcapath/orca $INPUT > log
done
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