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我在天河二号上装高斯的时候出现了以下问题
跑程序时光速报错。.out文件显示如下:
/tmp/slurmd/job1034175/slurm_script: line 3: source/software/g09/bsd/g09.profile: No such file or directory
/tmp/slurmd/job1034175/slurm_script: line 5: yhrun: command not found
运行脚本内容如下:
#!/bin/bash
export Gauss_SCRDIR=/BIGDATA1/sysu_whhu_1/WORKSPACE/g09scr
source/software/g09/bsd/g09.profile
export PATH=/BIGDATA1/sysu_whhu_1/software/g09:{PATH}
yhrun -n 1 -N 1 -c 24 g09 114btsfreq.com(我的输入文件是114btsfreq.com)
g09.profile文件修改过了,是这样的:
#
# These commands set up for use of Gaussian 09. They should be source'd
# into each Gaussian 09 user's .login file, after setting the following
# environment variable:
#
# g09root -- Directory which contains the g09 main directory. Defaults
# to users's home directory if not defined before entry.
#
# Top directories for the program:
#
gr=$home
if [ "$g09root" ]
then gr=$g09root
fi
GAUSS_EXEDIR="$gr/software/g09"
GAUSS_ARCHDIR="$gr/WORKSPACE/g09scr"
GMAIN=$GAUSS_EXEDIR
PATH=$PATH:$GAUSS_EXEDIR:$GAUSS_ARCHDIR
LD_LIBRARY_PATH=$GAUSS_EXEDIR
G09BASIS="$gr/software/g09/basis"
F_ERROPT1="271,271,2,1,2,2,2,2"
#following for sgi debugging
#TRAP_FPE="DEBUG;OVERFL=ABORT;DIVZERO=ABORT;INVALID=ABORT;INT_OVERFL=ABORT"
TRAP_FPE="OVERFL=ABORT;DIVZERO=ABORT;INT_OVERFL=ABORT"
MP_STACK_OVERFLOW="OFF"
# to partially avoid KAI stupidity
KMP_DUPLICATE_LIB_OK="TRUE"
export GAUSS_EXEDIR GAUSS_ARCHDIR PATH GMAIN LD_LIBRARY_PATH F_ERROPT1 TRAP_FPE MP_STACK_OVERFLOW \
KMP_DUPLICATE_LIB_OK G09BASIS
我的账号下显示主目录显示的是/BIGDATA1/sysu_whhu_1
其中高斯软件解压于/BIGDATA1/sysu_whhu_1/software/g09
g09.profile是在/BIGDATA1/sysu_whhu_1/software/g09/bsd这里。
我想不通哪里有问题,有大神能指出来吗?是我的脚本出错了?还是我修改了profile的时候出错了?
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