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Amber22的主要更新如下:
- Major extensions for alchemical free energy calculations using soft-core potentials, and some advanced lambda scheduling options. New ability to use SHAKE with TI.
- REST2-like enhanced sampling.
- Methods for studying protein-protein interactions using Gaussian accelerated MD (PPI-GaMD).
- Updates to self-guided Langevin dynamics, using both momentum and force guiding factors; new connections to the canonical ensemble.
- Kernel Modified MD allows on-the-fly updates to forcefields based on training configurations.
- Support in pmemd and mdgx for more types of "extra points".
AmberTools22的主要更新如下:
- New and updated forcefields:
- Lipid21 major update for lipids
- Polarizable water model, OPC3-pol
- New parameters for some fluorinated amino acids
- Quick package for Hartree-Fock and DFT electronic stucture calculations, with GPU support. Quick is integrated into sander for QM/MM simulations, and AmberTools22 contains significant performance improvements, a new geometry optimizer, and support for spin-unrestricted calculations.
- The 3D-RISM code now supports periodic boundaries, and has improved performance and scaling for open boundaries
- Detailed changelog for cpptraj. Changes include GIST improvements, new cluster analysis, and a "prepareforleap" script with support for carbohydrates.
- The PyRESP program supports RESP fitting for both additive and polariable force fields.
- New constant pressure protocols for the Amber pGM polarizable force field.
相对于Amber20,又无必要升级?这个Quick目前如何?看着似乎在QM/MM计算速度上有较大提升。
另外我在手册中看到有一章是写机器学习的,但十分简略,还不清楚amber未来是否会进一步支持机器学习力场的应用。
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