计算化学公社

 找回密码 Forget password
 注册 Register
Views: 559|回复 Reply: 1
打印 Print 上一主题 Last thread 下一主题 Next thread

[GROMACS] 求助gmx_MMPBSA膜蛋白计算pb报错

[复制链接 Copy URL]

8

帖子

0

威望

167

eV
积分
175

Level 3 能力者

跳转到指定楼层 Go to specific reply
楼主
我使用Charmm-gui加膜网站加膜,gmx分子动力学之后进行gmx_MMPBSA,但是出现以下错误,特请教大神。
File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/bin/gmx_MMPBSA", line 8, in <module>
    sys.exit(gmxmmpbsa())
  File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/lib/python3.9/site-packages/GMXMMPBSA/app.py", line 98, in gmxmmpbsa
    app.make_prmtops()
  File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/lib/python3.9/site-packages/GMXMMPBSA/main.py", line 682, in make_prmtops
    self.FILES.mutant_receptor_prmtop, self.FILES.mutant_ligand_prmtop) = maketop.buildTopology()
  File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/lib/python3.9/site-packages/GMXMMPBSA/make_top.py", line 125, in buildTopology
    tops = self.gmxtop2prmtop()
  File "/share/home/yangmk/anaconda3/envs/gmxMMPBSA/lib/python3.9/site-packages/GMXMMPBSA/make_top.py", line 574, in gmxtop2prmtop
    com_amb_prm = parmed.amber.AmberParm.from_structure(com_top)
  File "/share/home/yangmk/.local/lib/python3.9/site-packages/parmed/amber/_amberparm.py", line 288, in from_structure
    raise TypeError('Cannot instantiate an AmberParm from unknown functional')
TypeError: Cannot instantiate an AmberParm from unknown functional
Exiting. All files have been retained

2

帖子

0

威望

53

eV
积分
55

Level 2 能力者

2#
发表于 Post on 2024-10-29 11:47:54 | 只看该作者 Only view this author
楼主解决了吗?

本版积分规则 Credits rule

手机版 Mobile version|北京科音自然科学研究中心 Beijing Kein Research Center for Natural Sciences|京公网安备 11010502035419号|计算化学公社 — 北京科音旗下高水平计算化学交流论坛 ( 京ICP备14038949号-1 )|网站地图

GMT+8, 2024-11-23 05:29 , Processed in 0.173203 second(s), 21 queries , Gzip On.

快速回复 返回顶部 返回列表 Return to list