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各位老师,我在用CP2K做离子穿越MOF孔道的QMMM计算,体系见附件中的图片。我将system.pdb作为坐标文件,将system.psf作为拓扑文件。程序刚运行就出现了如下报错:
ERROR| Mismatching found between the total number of atoms
ERROR| and the number of atoms computed multiplying the Nr.
ERROR| of molecules by the number of atoms building that
ERROR| kind of molecule.
ERROR| This happens when the connectivity is wrongly built
ERROR| One example could be two same kind of molecules have
ERROR| a different number of atoms. Check the connectivity!
*******************************************************************************
* ___ *
* / \ *
* [ABORT] *
* \___/ CPASSERT failed *
* | *
* O/| *
* /| | *
* / \ topology_connectivity_util.F:465 *
*******************************************************************************
===== Routine Calling Stack =====
6 topology_connectivity_pack_10
5 topology_connectivity_pack
4 topology_control
3 fist_init
2 qmmm_env_create
1 CP2K
针对这个提示我也检查了我的拓扑文件,但看不出哪里出了问题。
还请各位老师赐教,谢谢。
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